Click for a searchable table with links to all ImmGen data series:
If these data were of value to you, we would be grateful if you could mention ImmGen in the acknowledgments of publications that were enriched by these data (for example: “This work benefitted from data assembled by the ImmGen consortium”), and/or quote the primary ImmGen reference: Heng TS, et al, Immunological Genome Project Consortium. Nat Immunol. 2008 10 : 1091.
It would also be most useful if you could send us an email for our records.
Sequence and transcriptome Reference
ImmGen is currently using the GRCm38 - mm10 genome assembly to map RNAseq data, and the GENCODE M25 transcriptome (older data were re-mapped to M25 in mid-2020). For relationships to previous versions see.
Comments and Suggestions
Suggestions for improvements on the data presentation are welcome, as are suggestions of cell-types or states that are missing from the databrowsers and would be useful to you.