Coarse module 21 - many unannotated genes and zinc fingers


Module's content:


Sequence motifs enriched regulators:
SYMBOLPWM_NAMERemarks 1Remarks 2Factor in module
EHFEHF_PWM_PRIMARYEHF_PWM_PRIMARYBADIS0
ELK1ELK1.02Elk-1ETSF palindromic-score: 0.397630
SATB1SATB1.01Special AT-rich sequence-binding protein 1, predominantly expressed in thymocytes, binds to matrix attachment regions (MARs)SATB palindromic-score: 0.598780
GABPAGABPA_PWM_PRIMARYGABPA_PWM_PRIMARYBADIS0
Eip74EFMA0026JASPAR_CORE_20080
ELK4ELK4MA0076JASPAR_CORE_20080
NKX3-1NKX31.01Prostate-specific homeodomain protein NKX3.1NKXH palindromic-score: 0.59040
HNF1AHNF1.01Hepatic nuclear factor 1HNF1 palindromic-score: 0.727320
SOX21SOX21_PWM_PRIMARYSOX21_PWM_PRIMARYBADIS0
SOX14SOX14_PWM_PRIMARYSOX14_PWM_PRIMARYBADIS0
GLIS2GLIS2_PWM_SECONDARYGLIS2_PWM_SECONDARYBADIS0
SPDEFSPDEF_PWM_PRIMARYSPDEF_PWM_PRIMARYBADIS0
ELK1ELK1MA0028JASPAR_CORE_20080
ARID5AARID5A_PWM_SECONDARYARID5A_PWM_SECONDARYBADIS0
LHX3LHX3.01Homeodomain binding site in LIM/Homeodomain factor LHX3LHXF palindromic-score: 0.913880
ETS1ETS1MA0098JASPAR_CORE_20080
ZFP128ZFP128_PWM_SECONDARYZFP128_PWM_SECONDARYBADIS0
HOXA6HOXA6HOXA6BULYK0
ETS1CETS1P54.01c-Ets-1(p54)ETSF palindromic-score: 0.514830
SOX1SOX1_PWM_PRIMARYSOX1_PWM_PRIMARYBADIS0
SOX4SOX4_PWM_SECONDARYSOX4_PWM_SECONDARYBADIS0
NKX3-1|NKX3-1NKX3-1NKX3-1BULYK0
TBPTBP_PWM_PRIMARYTBP_PWM_PRIMARYBADIS0
MEF2CMEF2.03Myogenic MADS factor MEF-2MEF2 palindromic-score: 0.672410
POU2F1OCT1.06Octamer-binding factor 16-Oct palindromic-score: 0.473550
SOX7SOX7_PWM_PRIMARYSOX7_PWM_PRIMARYBADIS0
AT_richAT_richnucleotide bias check palindromic-score: 10
SRYSRY_PWM_PRIMARYSRY_PWM_PRIMARYBADIS0
NKX3-1|NKX3-1NKX3-1MA0124JASPAR_CORE_20080
HOXC8HOXC8HOXC8BULYK0
IRC900814_PWM_PRIMARYIRC900814_PWM_PRIMARYBADIS0
MEF2CMEF2.02Myogenic MADS factor MEF-2MEF2 palindromic-score: 0.643790
NFIL3NFIL3MA0025JASPAR_CORE_20080
HOXA4HOXA4HOXA4BULYK0
MAFBMAFB_PWM_SECONDARYMAFB_PWM_SECONDARYBADIS0
SFPI1SPI1MA0080JASPAR_CORE_20080
NFE2L2NRF2.01Nuclear respiratory factor 2ETSF palindromic-score: 0.322650
POU2F1POU2F1POU2F1BULYK0
POU6F1BRN5.01Brn-5, POU-VI protein class (also known as emb and CNS-1)BRNF palindromic-score: 0.805230
HSF2HSF2.02Heat shock factor 2HEAT palindromic-score: 0.678460
MEF2CMEF2.01Myogenic enhancer factor 2MEF2 palindromic-score: 0.25210
HNF1AHNF1AMA0046JASPAR_CORE_20080
RUSH1-alfaMA0109JASPAR_CORE_20080
SRYSRYMA0084JASPAR_CORE_20080
NKX2-9NKX2-9NKX2-9BULYK0
ONECUT1HNF6.01Liver enriched Cut - Homeodomain transcription factor HNF6 (ONECUT)HNF6 palindromic-score: 0.377860
DEAF1NUDR.01NUDR (nuclear DEAF-1 related transcriptional regulator protein)DEAF palindromic-score: 0.567320
FOXJ3FOXJ3_PWM_PRIMARYFOXJ3_PWM_PRIMARYBADIS0
MEF2CMEF2.05MEF2MEF2 palindromic-score: 0.759580
ARID3AARID3A_PWM_SECONDARYARID3A_PWM_SECONDARYBADIS0
TLX2TLX2TLX2BULYK0
Foxq1MA0040JASPAR_CORE_20080
SIX6SIX6SIX6BULYK0
NKX2-3NKX2-3NKX2-3BULYK0
SOX11SOX11_PWM_SECONDARYSOX11_PWM_SECONDARYBADIS0
MEF2ARSRFC4.01Related to serum response factor, C4MEF2 palindromic-score: 0.804190
DBX1DBX1DBX1BULYK0
DLX3DLX3DLX3BULYK0
GABPAGABPAMA0062JASPAR_CORE_20080
HOXC4HOXC4HOXC4BULYK0
dl_1MA0022JASPAR_CORE_20080
FOXJ2FHXB.01Fork head homologous X binds DNA with a dual sequence specificity (FHXA and FHXB)FKHD palindromic-score: 0.497370
SP100SP100_PWM_PRIMARYSP100_PWM_PRIMARYBADIS0
SOX15SOX15_PWM_SECONDARYSOX15_PWM_SECONDARYBADIS0
SRYSRY.01Sex-determining region Y gene productSORY palindromic-score: 0.25680
DLX4DLX4DLX4BULYK0
ARID5AARID5A_PWM_PRIMARYARID5A_PWM_PRIMARYBADIS0
HNF1AHNF1.03Hepatic nuclear factor 1HNF3 palindromic-score: 0.687330
HLXHLX1HLX1BULYK0
DLX1DLX1.01DLX-1, -2, and -5 binding sitesHOMF palindromic-score: 0.952640
HSF1HSF1.01Heat shock factor 1HEAT palindromic-score: 0.884590
ARARE.01Androgene receptor binding siteGREF palindromic-score: 0.66840
PAX4|PAX4PAX4PAX4BULYK0
FOXC1FREAC3.01Fork head related activator-3 (FOXC1)FKHD palindromic-score: 0.303290
ONECUT2OC2.01CUT-homeodomain transcription factor Onecut-2HNF7 palindromic-score: 0.361260
Lhx3MA0135JASPAR_CORE_20080
MEF2AMEF2AMA0052JASPAR_CORE_20080
CDX2CDX2.01Cdx-2 mammalian caudal related intestinal transcr. factorCDXF palindromic-score: 0.325890
Lhx3MA0134JASPAR_CORE_20080
BARX1BARX1BARX1BULYK0
XFD1.01Xenopus fork head domain factor 1 (FoxA4a)FKHD palindromic-score: 0.397960
SOX7SOX7_PWM_SECONDARYSOX7_PWM_SECONDARYBADIS0
HMX3HMX3HMX3BULYK0
POU1F1POU1F1POU1F1BULYK0
ZFP187ZFP187_PWM_PRIMARYZFP187_PWM_PRIMARYBADIS0
FOXL1FOXL1_PWM_PRIMARYFOXL1_PWM_PRIMARYBADIS0
ZFHX3ATBF1.01AT-binding transcription factor 1ATBF palindromic-score: 0.606920